checkHousekeepingCombination: Iterate all the combination of housekeeping genes

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

Iterate all the combination of housekeeping genes

Description

Iterate all the combination of housekeeping genes

Usage

checkHousekeepingCombination(
  raw.ct.df,
  housekeeping.ct.df,
  group,
  alternative = "less",
  p.cutoff = 0.05,
  difference.cutoff = 0,
  sep = ", ",
  logTen = FALSE,
  expTwo = FALSE,
  scale = TRUE
)

Arguments

raw.ct.df	row is sample
housekeeping.ct.df	row is sample
group	Second shuld be TRUE
alternative	Default "less". One of c("less", "greater", "both")
p.cutoff	Default 0.05
difference.cutoff	Default 0. Should be greater than 0. The direction of difference depends on alternative.
sep	Default ", "
logTen	log10(2^(-ΔCT))
expTwo	2^(-ΔCT)
scale

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.