ClusterProfiler.OverRepresentationTest: Perform over-representation test by cluster profiler

In ProfessionalFarmer/loonR: Common function in bioinformatics analysis

Perform over-representation test by cluster profiler

Description

Perform over-representation test by cluster profiler

Usage

ClusterProfiler.OverRepresentationTest(
  gene,
  minGSSize = 10,
  qvalue = 0.05,
  GO = TRUE,
  KEGG = TRUE,
  MSigDb = TRUE,
  Hallmark = TRUE,
  exp.gene.type = "ENSEMBL"
)

Arguments

gene	A vector. Must gene symbol
minGSSize	10
qvalue	0.05
GO	TRUE
KEGG	TRUE
MSigDb	TRUE
Hallmark	TRUE
exp.gene.type	RNA expression ID ENSEMBL. keytypes(org.Hs.eg.db)

ProfessionalFarmer/loonR documentation built on Oct. 9, 2024, 9:56 p.m.