compensate: compensate the flow data asssociated with the GatingSet

compensateR Documentation

compensate the flow data asssociated with the GatingSet

Description

The compensation is saved in the GatingSet and can be retrieved by gh_get_compensations.

Usage

## S4 method for signature 'GatingSet,ANY'
compensate(x, spillover)

Arguments

x

GatingSet, GatingSetList, cytoframe, or cytoset

spillover

compensation object or spillover matrix or a list of compensation objects

Value

a GatingSet, GatingSetList, cytoframe, or cytoset object with the underling flow data compensated.

Examples

## Not run: 

cfile <- system.file("extdata","compdata","compmatrix", package="flowCore")
comp.mat <- read.table(cfile, header=TRUE, skip=2, check.names = FALSE)
## create a compensation object
comp <- compensation(comp.mat,compensationId="comp1")
#add it to GatingSet
gs <- compensate(gs, comp)

## End(Not run)

RGLab/flowWorkspace documentation built on Jan. 31, 2024, 5:15 a.m.