estimateLogicle: Compute logicle transformation from the flowData associated...

In RGLab/flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Compute logicle transformation from the flowData associated with a GatingHierarchy

Description

See details in estimateLogicle

Usage

## S3 method for class 'GatingHierarchy'
estimateLogicle(x, channels, ...)

Arguments

x	a GatingHierarchy
channels	channels or markers for which the logicle transformation is to be estimated.
...	other arguments

Value

transformerList object

Examples

## Not run: 
 # gs is a GatingSet
 trans.list <- estimateLogicle(gs[[1]], c("CD3", "CD4", "CD8")) 
 # trans.list is a transformerList that can be directly applied to GatinigSet
 gs <- transform(gs, trans.list)

## End(Not run)

RGLab/flowWorkspace documentation built on March 17, 2024, 2:24 p.m.