gh_apply_to_cs: Construct a 'GatingSet' using a template

In RGLab/flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Construct a GatingSet using a template

Description

This uses a GatingHierarchy as a template to apply to other loaded samples in the form of a cytoset, resulting in a GatingSet. The transformations and gates from the template are applied to all samples. The compensation applied to each of the samples can be controlled via the compensation_source argument.

Usage

gh_apply_to_cs(x, cs, swap_cols = FALSE, compensation_source = "sample", ...)

Arguments

x	GatingHierarchy
cs	a cytoset
swap_cols	for internal usage
compensation_source	One of the following options: "sample" – each cytoframe will be compensated with the spillover matrix included in its own FCS "template" – all cytoframes will be compensatied with the spillover matrix of the template GatingHierarchy "none" – no compensation will be applied
...	not currently used

Value

a GatingSet

RGLab/flowWorkspace documentation built on March 17, 2024, 2:24 p.m.