View source: R/GatingHierarchy_Methods.R
gh_pop_get_data  R Documentation 
get gated flow data from a GatingHierarchy/GatingSet/GatingSetList
gh_pop_get_data(obj, y = "root", inverse.transform = FALSE, ...)
obj 
A 
y 

inverse.transform 
logical flag indicating whether to inverse transform the data 
... 
arguments passed to ncdfFlow::[[ 
Returns a flowFrame/flowSet containing the events in the gate defined at node y
.
Subset membership can be obtained using gh_pop_get_indices
.
Population statistics can be obtained using getPop
and gh_pop_compare_stats
.
When calling gh_pop_get_data
on a GatingSet,the trees representing the GatingHierarchy for each sample in the GaingSet are presumed to have the same structure.
To update the data, use gs_cyto_data
method.
A flowFrame
object if obj
is a GatingHierarchy.
A flowSet
or ncdfFlowSet
if a GatingSet
.
A ncdfFlowList
if a GatingSetList
.
gs_cyto_data
gh_pop_get_indices
gh_pop_compare_stats
## Not run:
#G is a GatingSet
geData(G,3) #get a flowSet constructed from the third node / population in the tree.
geData(G,"cd4")
#gh is a GatingHierarchy
gh_pop_get_data(gh)
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.