|inverse hyperbolic sine transform function generator...
|Inverse hyperbolic sine transformation.
|A class describing logical operation (& or |) of the...
|Bracket operators on 'GatingSet' and 'GatingSetList' objects
|Append data columns to a flowFrame
|return the cytoframe backend storage format
|Return the file path of the underlying h5 file
|Save the cytoframe to disk
|Save the cytoframe as h5 format
|Remove on-disk files associatated with flowWorkspace data...
|Remove temporary files associatated with flowWorkspace data...
|compensate the flow data asssociated with the GatingSet
|Methods for conversion between flowCore and flowWorkspace...
|convert h5 based gs archive to tiledb
|convert the legacy GatingSet archive (mixed with R and C++...
|Add a cytoframe to a cytoset
|Return the path of the underlying data files
|update a cytoframe in a cytoset
|'cytoframe': A reference class for efficiently managing the...
|Methods to change channel and marker names for 'cytoframe'...
|'cytoset': a reference class for efficiently managing the...
|get/set the default backend format of cytoframe
|delete the archive of GatingSet
|Compute logicle transformation from the flowData associated...
|Extract the population name from the node path It strips the...
|convert flowCore filter to a list It convert the flowCore...
|Generate the breaks that makes sense for flow data...
|construct the flowJo-type biexponentioal transformation...
|flowJo biexponential transformation.
|inverse hyperbolic sine transform function
|flowJo inverse hyperbolic sine transformation.
|flog transform function
|helper function to generate a trans objects Used by other...
|Deprecated functions in package 'flowWorkspace'.
|Import and replicate flowJo workspaces and gating schemes...
|constructors for GatingSet
|Construct a 'GatingSet' using a template
|Construct a 'GatingSet' using a template and FCS files
|Copy a node along with all of its descendant nodes to the...
|Retrieve the cluster labels from the cluster nodes
|Retrieve the compensation matrices from a 'GatingHierarchy'...
|Return a list of transformations or a transformation in a...
|Compare the stats(count/freq) between the version parsed from...
|check if a node is clustering node
|get gated flow data from a...
|get all the descendant nodes for the given ancester
|convert the partial gating path to the full path
|Get the membership indices for each event with respect to a...
|Return the single-cell matrix of 1/0 dichotomized expression
|Get count or proportion from populations
|move a node along with all of its descendant nodes to the...
|directly update event indices without changing gates
|save the event counts parsed from xml into c++ tree structure
|try to determine the redundant terminal(or leaf) nodes that...
|Fetch or replace the flowData object associated with a...
|extract compensation object from GatingSet
|get all the leaf nodes
|Get the names of all nodes from a gating hierarchy.
|Return the cell events data that express in any of the single...
|determine whether the flow data associated with a GatingSet...
|Merge a GatingSetList into a single GatingSet
|visualize the tree structure differnece among the GatingSets
|Plot the coefficient of variation between xml and openCyto...
|Create a GatingSet and add/remove the flowCore gate(or...
|Return the name of the parent population or a list of child...
|Return a table of population statistics for all populations...
|Return the flowCore gate definition associated with a node in...
|subset gs by population node
|Extract stats from populations(or nodes)
|Extract stats from populations(or nodes) within a restricted...
|update the gate
|Update the name of one node in a gating hierarchy/GatingSet.
|hide/unhide a node
|Remove the channels from flow data that are not used by gates
|Remove the terminal leaf nodes that make the gating trees to...
|split GatingSets into groups based on their flow channels
|split GatingSets into groups based on their gating schemes Be...
|Update the channel information of a GatingSet (c++ part)
|Retrieve/replace the GUID of a GatingSet or GatingSetList
|check whether a cytoframe/cytoset is a subsetted(by column or...
|Retrieve a specific keyword for a specific sample in a...
|Methods to alter keywords in 'cytoframe', 'cytoset',...
|apply 'FUN' to each sample (i.e. 'GatingHierarchy' or...
|Methods to get the length of a GatingSet
|Load the cytoframe from disk
|Read a single FCS file in to a cytoframe
|Read one or several FCS files in to a cytoset
|Flush/load meta data (keywords, pData, channels/markers)...
|Lock/Unlock the cytoset/cytoframe by turning on/off its...
|GatingML2 version of logicle transformation.
|get/set the log level
|Gating-ML 2.0 Log transformation.
|Get/set the column(channel) or marker names
|Merge a list of GatingSets into a single GatingSet
|Fetch the flowData object associated with a GatingSet .
|The flags of gate nodes
|It is now moved along with entire flowJo parser to CytoML...
|read/set pData of flow data associated with...
|plot a gating tree
|Add populations to a GatingHierarchy
|Determine tick mark locations and labels for a given channel...
|Compute the cell events by the gates stored within the gating...
|Simplified geometric rotation of gates associated with nodes
|Get/update sample names in a GatingSet
|save/load a cytoset to/from disk.
|save/load a GatingSet/GatingSetList to/from disk.
|Simplified geometric scaling of gates associated with nodes
|Simplified geometric translation of gates associated with...
|The tools to standardize the tree structures and channel...
|built-in stats functions.
|subset the GatingSet/GatingSetList based on 'pData'
|Swap the colnames Perform some validity checks before...
|tranform the flow data asssociated with the GatingSet
|Constructor for transformerList object
|Simplified geometric transformations of gates associated with...
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