logicleGml2_trans: GatingML2 version of logicle transformation.

Description Usage Arguments Value Examples

Description

The only difference from logicle_trans is it is scaled to c(0,1) range.

Usage

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logicleGml2_trans(
  T = 262144,
  M = 4.5,
  W = 0.5,
  A = 0,
  n = 6,
  equal.space = FALSE
)

Arguments

T, M, W, A

see logicletGml2

n

desired number of breaks (the actual number will be different depending on the data range)

equal.space

whether breaks at equal-spaced intervals

Value

a logicleGml2 transformation object

Examples

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trans.obj <- logicleGml2_trans(equal.space = TRUE)
data <- 1:1e3
brks.func <- trans.obj[["breaks"]]
brks <- brks.func(data)
brks # logicle space displayed at raw data scale
#transform it to verify the equal-spaced breaks at transformed scale
print(trans.obj[["transform"]](brks))

RGLab/flowWorkspace documentation built on July 18, 2021, 9:05 p.m.