View source: R/GatingHierarchy_Methods.R
gh_get_transformations  R Documentation 
Return a list of all the transformations or a transformation in a GatingHierarchy
gh_get_transformations(
x,
channel = NULL,
inverse = FALSE,
only.function = TRUE,
...
)
x 
A 
channel 

inverse 

only.function 

... 
other arguments
equal.spaced 
Returns a list of the transformations or a transformation in the flowJo workspace.
The list is of length L
, where L
is the number of distinct transformations applied to samples
in the flowjo_workspace
. Each element of L
is itself a list
of length M
,
where M
is the number of parameters that were transformed for a sample or group of samples
in a flowjo_workspace
. For example, if a sample has 10 parameters, and 5 are transformed during analysis,
using two different sets of transformations, then L will be of length 2, and each element of L will be of length 5.
The elements of L
represent channel or parameterspecific transformation functions that map from raw intensity values
to channelspace used by flowJo.
lists of functions(or transform objects when only.function is FALSE), with each element of the list representing a transformation applied to a specific channel/parameter of a sample.
## Not run:
#Assume gh is a GatingHierarchy
gh_get_transformations(gh); # return a list transformation functions
gh_get_transformations(gh, inverse = TRUE); # return a list inverse transformation functions
gh_get_transformations(gh, channel = "FL1H") # only return the transfromation associated with given channel
gh_get_transformations(gh, channel = "FL1H", only.function = FALSE) # return the entire transform object
## End(Not run)
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