gs_remove_redundant_nodes: Remove the terminal leaf nodes that make the gating trees to...

In RGLab/flowWorkspace: Infrastructure for representing and interacting with gated and ungated cytometry data sets.

Remove the terminal leaf nodes that make the gating trees to be different from one another.

Description

It is usually called after gs_split_by_tree and gs_check_redundant_nodes. The operation is done in place through external pointers which means all the orginal GatingSets are modified.

Usage

gs_remove_redundant_nodes(x, toRemove)

Arguments

x	GatingSet or list of groups(each group is a list of 'GatingSet'). When it is a list, it is usually the outcome from gs_split_by_tree.
toRemove	list of the node sets to be removed. its length must equals to the length of 'x'. When x is a list, toRemove is usually the outcome from gs_check_redundant_nodes.

Examples

## Not run: 
gslist <- list(gs1, gs2, gs3, gs4, gs5)
gs_groups <- gs_split_by_tree(gslist)
toRm <- gs_check_redundant_nodes(gs_groups)
gs_remove_redundant_nodes(gs_groups, toRm)

#Now they can be merged into a single GatingSetList.
#Note that the original gs objects are all modified in place.
GatingSetList(gslist)

## End(Not run)

RGLab/flowWorkspace documentation built on March 17, 2024, 2:24 p.m.