AddGenePosDetails_RemoveXandYandMT: Add gene positional details

In RHReynolds/LDSCforRyten: Run LDSC on Ryten Lab Server

Description

Function for extracting human gene positional information and removing X, Y and MT chromosomal genes.

Usage

AddGenePosDetails_RemoveXandYandMT(
  dataframe,
  columnToFilter,
  mart = 38,
  attributes,
  filter
)

Arguments

dataframe	Dataframe with gene names.
columnToFilter	Name of column in dataframe, which contains gene names.
mart	Specify genome build. Baseline from LDSC based on hg19/37.
attributes	Vector of attributes to extract from BioMart.
filter	Vector of filter to be used for BioMart query.

Value

Original dataframe together with gene positional information.

RHReynolds/LDSCforRyten documentation built on Sept. 27, 2021, 5:20 p.m.