Files in RHReynolds/LDSCforRyten
Run LDSC on Ryten Lab Server
.Rbuildignore
.gitignore
DESCRIPTION
LDSCforRyten.Rproj
LICENSE
LICENSE.md
NAMESPACE
R/GWAS_formatting_functions.R
R/LDSC_Creatingannot_Functions.R
R/LDSC_Pipeline_Functions.R
R/LDSC_SummariseOutput_Functions.R
R/utils-pipe.R
README.md
man/AddBPWindow.Rd
man/AddGenePosDetails_RemoveXandYandMT.Rd
man/Assimilate_H2_results.Rd
man/Assimilate_H2_results_multipleannot.Rd
man/Calculate_H2.Rd
man/Calculate_LDscore.Rd
man/Calculate_enrichment_SE_and_logP.Rd
man/Create_GWAS_df.Rd
man/Plot_H2_coefficient.Rd
man/Plot_H2_enrichment_coefficient.Rd
man/add_RS_to_GWAS.Rd
man/convert_z_score.Rd
man/create_annot_file_and_export.Rd
man/creating_baseline_df.Rd
man/df2GRanges.Rd
man/get_LDSC_fixed_args.Rd
man/keep_duplicates.Rd
man/liftover_hg19_to_hg38.Rd
man/overlap_annot_hits_w_baseline.Rd
man/overlap_annot_list.Rd
man/pipe.Rd
man/remove_duplicates.Rd
misc/LDSC_Baseline_Models.xlsx
misc/LDSC_GWAS_details.xlsx
misc/LDSC_creating_SNPsinBMfiles.R
pipelines/LDSC_Pipeline_Entire.R
vignettes/tutorial.Rmd
vignettes/tutorial.html
