add_RS_to_GWAS: Find overlapping RS ids in GWAS using genomic co-ordinates.

In RHReynolds/LDSCforRyten: Run LDSC on Ryten Lab Server

Description

Function to find the RS ids in a GWAS where SNPs have been provided as genomic coordinates i.e. some combination of SNP and BP.

Usage

add_RS_to_GWAS(GWAS, dbSNPref)

Arguments

GWAS	GWAS with a minimum of 2 columns labelled CHR and BP. If additional columns included these will be preserved.
dbSNPref	BS genome reference snps (choose appropriate dbSNP build dependent on genome build)

Value

GWAS with RS ids.

RHReynolds/LDSCforRyten documentation built on Sept. 27, 2021, 5:20 p.m.