creating_baseline_df: Function assembling list of SNPs in baseline LD score model

Description Usage Arguments Value

View source: R/LDSC_Creatingannot_Functions.R

Description

Function assembling list of SNPs in baseline LD score model

Usage

1
creating_baseline_df(baseline_model = c("53", "75", "76", "86", "97"))

Arguments

baseline_model

Specify the baseline model to be used i.e. 53, 75, 76, 86 or 97 annotation model. Recommendations for use in cell-type specific analyses from Alkes Price group: 1. We recommend that for identifying critical tissues/cell-types via P-value of tau, it is best to use the baseline model, specifically baseline v1.2. 2. We recommend that for estimating heritability enrichment (i.e., including tissue-specific annotations, it is best to use baselineLD v2.2.

Value

Dataframe of baseline SNPs with BP and CHR.


RHReynolds/LDSCforRyten documentation built on Sept. 27, 2021, 5:20 p.m.