Description Usage Arguments Value
View source: R/LDSC_Creatingannot_Functions.R
Function assembling list of SNPs in baseline LD score model
1 | creating_baseline_df(baseline_model = c("53", "75", "76", "86", "97"))
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baseline_model |
Specify the baseline model to be used i.e. 53, 75, 76, 86 or 97 annotation model. Recommendations for use in cell-type specific analyses from Alkes Price group: 1. We recommend that for identifying critical tissues/cell-types via P-value of tau, it is best to use the baseline model, specifically baseline v1.2. 2. We recommend that for estimating heritability enrichment (i.e., including tissue-specific annotations, it is best to use baselineLD v2.2. |
Dataframe of baseline SNPs with BP and CHR.
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