Assimilate_H2_results_multipleannot: Assimilate LDSC output from multiple annotations run...
In RHReynolds/LDSCforRyten: Run LDSC on Ryten Lab Server
Description
Usage
Arguments
Value
View source: R/LDSC_SummariseOutput_Functions.R
Description
Function assembling heritability results from LD score regression run with
multiple annotations (i.e. conditional upon one another). In other words, in
the –ref-ld-chr of 'ldsc' multiple annotations (in addition to baseline) are
used.
Usage
1
Assimilate_H2_results_multipleannot(path_to_results)
Arguments
path_to_results
List of file paths where .results output from LDSC
stored. For the function to work (i.e. provide the full name of the
annotation and the name of the GWAS), it is important that neither the GWAS
name or the annotation name includes '_'. If it does, anything after the
first word in the GWAS name will be removed, or anything before the last
word in the annotation will be removed. Consider using a different
separator in annotation/GWAS names e.g. a full stop, or colon.
Value
Dataframe of results together with associated annotation names and
GWAS.
RHReynolds/LDSCforRyten documentation built on Sept. 27, 2021, 5:20 p.m.
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Description Usage Arguments Value
View source: R/LDSC_SummariseOutput_Functions.R
Description
Function assembling heritability results from LD score regression run with multiple annotations (i.e. conditional upon one another). In other words, in the –ref-ld-chr of 'ldsc' multiple annotations (in addition to baseline) are used.
Usage
1 | Assimilate_H2_results_multipleannot(path_to_results)
|
Arguments
path_to_results |
List of file paths where .results output from LDSC stored. For the function to work (i.e. provide the full name of the annotation and the name of the GWAS), it is important that neither the GWAS name or the annotation name includes '_'. If it does, anything after the first word in the GWAS name will be removed, or anything before the last word in the annotation will be removed. Consider using a different separator in annotation/GWAS names e.g. a full stop, or colon. |
Value
Dataframe of results together with associated annotation names and GWAS.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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