match_query_ccl_to_database: match_query_ccl_to_database

In RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

match_query_ccl_to_database

Description

Matches query ccl to the database

Usage

match_query_ccl_to_database(
  g_query,
  ref_gen = "GRCH37",
  library_name,
  mutational_weight_inclusion_threshold
)

Arguments

g_query	IRanges object that contains the variants
ref_gen	Reference genome version. All training sets are associated with a reference genome version. Default: GRCH37
library_name	a character string giving the name of the library
mutational_weight_inclusion_threshold	a numerical giving the lower bound for mutational weight to be included

Value

The R Table sim_list which contains the CoSMIC CLP fingerprints

RaikOtto/Younikorn documentation built on Oct. 18, 2022, 1:21 a.m.