parse_vcf_file: Filter Parsed VCF Files
In RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint
View source: R/Parser_scripts.R
parse_vcf_file R Documentation
Filter Parsed VCF Files
Description
Intern utility function. Filters the parsed VCF file for all informations
except for the start and length of variations/mutations.
Usage
parse_vcf_file(
vcf_file,
ref_gen,
library_name
)
Arguments
vcf_file
character string giving the path to the vcf file
on the operating system.
ref_gen
Reference genome version
library_name
Name of the reference library
Value
Loci-based DNA-mutational fingerprint of the cancer cell line
as found in the input VCF file.
RaikOtto/Younikorn documentation built on Oct. 18, 2022, 1:21 a.m.
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View source: R/Parser_scripts.R
| parse_vcf_file | R Documentation |
Filter Parsed VCF Files
Description
Intern utility function. Filters the parsed VCF file for all informations except for the start and length of variations/mutations.
Usage
parse_vcf_file(
vcf_file,
ref_gen,
library_name
)
Arguments
vcf_file |
character string giving the path to the vcf file on the operating system. |
ref_gen |
Reference genome version |
library_name |
Name of the reference library |
Value
Loci-based DNA-mutational fingerprint of the cancer cell line as found in the input VCF file.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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