remove_ccls_from_database: Remove Cancer Cell Line

In RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

Remove Cancer Cell Line

Description

This function removes a cancer cell line training fingerprint (VCF file) from the database. The names of all training sets can be seen by using the function show_contained_cls.

Usage

remove_ccls_from_database(ccl_names, ref_gen = "GRCH37",
    library_name, test_mode = FALSE)

Arguments

ccl_names	A character vector giving the names of the cancer cell line identifiers to be removed. Can be one or many
ref_gen	A character vector specifying the reference genome version. All training sets are associated with a reference genome version. Default is "GRCH37".
library_name	Name of the library from which ccls are to be removed
test_mode	Signifies if this is a test run

Value

Message that indicates whether the removal was succesful.

Examples

remove_ccls_from_database(
    ccl_names = "HT29",
    ref_gen = "GRCH37",
    library_name = "CELLMINER",
    test_mode = TRUE
)

RaikOtto/Younikorn documentation built on Oct. 18, 2022, 1:21 a.m.