RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint
Version 0.99.12

This packages enables users to identify cancer cell lines. Cancer cell line misidentification and cross-contamination reprents a significant challenge for cancer researchers. The identification is vital and in the frame of this package based on the locations/ loci of somatic and germline mutations/ variations. The input format is vcf/ vcf.gz and the files have to contain a single cancer cell line sample (i.e. a single member/genotype/gt column in the vcf file). The implemented method is optimized for the Next-generation whole exome and whole genome DNA-sequencing technology.

Getting started

Package details

AuthorRaik Otto
Bioconductor views Software StatisticalMethod
Maintainer'Raik Otto' <[email protected]>
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
RaikOtto/Younikorn documentation built on May 9, 2017, 11:07 p.m.