parse_vcf_query_into_db: parse_vcf_query_into_db This function adds the variants of...

In RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

parse_vcf_query_into_db This function adds the variants of parsed custom CCLs to a monet DB instance

Description

parse_vcf_query_into_db This function adds the variants of parsed custom CCLs to a monet DB instance

Usage

parse_vcf_query_into_db(
  g_query,
  ref_gen = "GRCH37",
  library_name,
  test_mode = FALSE
)

Arguments

g_query	a GenomicRanges object
ref_gen	a character string specifying the reference genome version. All training sets are associated with a reference genome version. Default is "GRCH37".
library_name	a character string giving the name of the library to add the cancer cell lines to. Default is "CUSTOM". Library name will be automatically added as a suffix to the identifier.
test_mode	Is this a test? Just for internal use

Value

Message wheather the adding was successful

RaikOtto/Younikorn documentation built on Oct. 18, 2022, 1:21 a.m.