show_contained_ccls: show_contained_ccls

In RaikOtto/Younikorn: Identification of cancer cell lines based on their weighted mutational/ variational fingerprint

show_contained_ccls

Description

This function displays the names, amount of mutations and the overall weight of the mutations of all contained cancer cell line fingerprints for a chosen reference genome and optional library.

Usage

show_contained_ccls(ref_gen, verbose)

Arguments

ref_gen	a character vector specifying the reference genome version. All training sets are associated with a reference genome version. Default is "GRCH37".
verbose	Should DB informations be printed?

Value

R table which contains identifiers of all cancer cell line samples which match the specified parameters (reference genome and library).

Examples

## Show all contained cancer cell lines for reference GRCH37:
show_contained_ccls(ref_gen = "GRCH37", verbose = TRUE)

RaikOtto/Younikorn documentation built on Oct. 18, 2022, 1:21 a.m.