COJO_get_stepwise_results: Gather stepwise conditional results

In RajLabMSSM/echofinemap: echoverse module: Fine-mapping functions

Gather stepwise conditional results

Description

Gather and preprocess the results of the GCTA-COJO conditional stepwise procedure. GTCA-COJO Documentation:
"Perform a stepwise model selection procedure to select independently associated SNPs. Results will be saved in a .jma file with additional file .jma.ldr showing the LD correlations between the SNPs."

Usage

COJO_get_stepwise_results(
  cojo_dir = NULL,
  prefix = "cojo",
  jma_cojo_path = file.path(cojo_dir, paste0(prefix, ".jma.cojo")),
  verbose = TRUE
)

Arguments

prefix	Prefix to use for file names.
verbose	Print messages.

Value

independent_snps

RajLabMSSM/echofinemap documentation built on Jan. 3, 2023, 1:42 a.m.