create_method_path: Create method path

In RajLabMSSM/echofinemap: echoverse module: Fine-mapping functions

Create method path

Description

Create a fine-mapping method-specific path.

Usage

create_method_path(
  locus_dir,
  finemap_method,
  include_astrices = FALSE,
  LD_reference = NULL,
  compress = FALSE
)

Arguments

locus_dir	Locus-specific directory to store results in.
finemap_method	Fine-mapping method to run. See lfm for a list of all fine-mapping methods currently available.
include_astrices	Whether to keep any astrices in file path.
LD_reference	Name of the LD reference panel.
compress	Whether to add ".gz" at the end of the file path.

See Also

Other finemapping functions: multifinemap_handler_method(), multifinemap_handler(), multifinemap()

Examples

locus_dir <- echodata::locus_dir
path <- echofinemap::create_method_path(locus_dir = locus_dir, 
                                        finemap_method = "SUSIE")

RajLabMSSM/echofinemap documentation built on Jan. 3, 2023, 1:42 a.m.