POLYFUN_gather_annotations: Find and import PolyFun annotation files

In RajLabMSSM/echofinemap: echoverse module: Fine-mapping functions

Find and import PolyFun annotation files

Description

Find and import PolyFun annotation files

Usage

POLYFUN_gather_annotations(
  chromosomes = seq_len(22),
  subset_snps = NULL,
  polyfun_annots
)

See Also

Other polyfun: POLYFUN_compute_priors(), POLYFUN_download_ref_files(), POLYFUN_find_folder(), POLYFUN_finemapper(), POLYFUN_gather_ldscores(), POLYFUN_help(), POLYFUN_import_priors(), POLYFUN_initialize(), POLYFUN_munge_summ_stats(), POLYFUN_prepare_snp_input(), POLYFUN_run_ldsc(), POLYFUN()

Examples

## Not run: 
dat <- echodata::BST1  
annot_DT <- POLYFUN_gather_annotations(chromosomes=dat$CHR[1],
                                       subset_snps=subset_snps, 
                                       polyfun_annots="/pd-omics/tools/polyfun/annotations/baselineLF2.2.UKB")

## End(Not run)

RajLabMSSM/echofinemap documentation built on Jan. 3, 2023, 1:42 a.m.