PAINTOR_run: Run PAINTOR

In RajLabMSSM/echofinemap: echoverse module: Fine-mapping functions

Run PAINTOR

Description

Run PAINTOR executable.

Usage

PAINTOR_run(
  paintor_path = NULL,
  PT_results_path,
  inputFile_path,
  ld_paths,
  zscore_cols,
  max_causal,
  Gname = "Enrichment.Estimates.txt",
  RESname = "results.txt",
  ANname = "annotations.txt",
  method = c("mcmc", "enumerate"),
  seed = 2022,
  auto_restart = FALSE,
  verbose = TRUE
)

Arguments

paintor_path	[Optional] Path to PAINTOR executable. Will be automatically installed if set to NULL (default).
max_causal	Maximum number of causal SNPs.
method	"enumerate" is actually faster when max_causal is small (<3), but far larger max_causal use "mcmc".
seed	Set the random seed for reproducible results.
auto_restart	Automatically rerun PAINTOR if it fails the first time.
verbose	Print messages.

RajLabMSSM/echofinemap documentation built on Jan. 3, 2023, 1:42 a.m.