POLYFUN_finemapper: Run _PolyFun+SUSIE_ fine-mapping pipeline

In RajLabMSSM/echofinemap: echoverse module: Fine-mapping functions

Run PolyFun+SUSIE fine-mapping pipeline

Description

Run PolyFun+SUSIE fine-mapping pipeline

Usage

POLYFUN_finemapper(
  polyfun = NULL,
  dat = NULL,
  npz_gz_LD = NULL,
  locus = NULL,
  sample_size = NULL,
  locus_dir,
  n_causal = 5,
  method = "susie",
  h2_path = NULL,
  conda_env = "echoR_mini",
  verbose = TRUE
)

Source

https://www.nature.com/articles/s41588-020-00735-5

See Also

Other polyfun: POLYFUN_compute_priors(), POLYFUN_download_ref_files(), POLYFUN_find_folder(), POLYFUN_gather_annotations(), POLYFUN_gather_ldscores(), POLYFUN_help(), POLYFUN_import_priors(), POLYFUN_initialize(), POLYFUN_munge_summ_stats(), POLYFUN_prepare_snp_input(), POLYFUN_run_ldsc(), POLYFUN()

RajLabMSSM/echofinemap documentation built on Jan. 3, 2023, 1:42 a.m.