createCatalogueDB: Main function to fill uORF database

In Roleren/uORFomePipe: uORF prediction in R

Main function to fill uORF database

Description

Step 4 of uORFome pipeline The rows of tables will always be uORFs in order as the candidate uORF file For transcripts it will be the transcript order in cageTx

Usage

createCatalogueDB(
  df.cage,
  dataBaseFolder = get("dataBaseFolder", envir = .GlobalEnv),
  idFolder = get("idFolder", envir = .GlobalEnv),
  dataFolder = get("dataFolder", envir = .GlobalEnv),
  leadersFolder = get("leadersFolder", envir = .GlobalEnv)
)

Arguments

df.cage

ORFik experiment of CAGE, set to NULL if you don't have CAGE.

Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.