getBestIsoformStartCodonCoverage: A filter per stop codon group
In Roleren/uORFomePipe: uORF prediction in R
View source: R/ClassifierTrainingData.R
getBestIsoformStartCodonCoverage R Documentation
A filter per stop codon group
Description
Uses the ribo-seq libraries for ribo-seq validation
get start for each in group, count overlaps, return orf with
highest per group
Usage
getBestIsoformStartCodonCoverage(tissue, cdsAndThree = FALSE, mode)
Arguments
cdsAndThree
logical, default: FALSE, that is run of uORFs, if TRUE
run for cds and trailers.
Value
list of length 1 or 2, (2 if cdsAndThree is TRUE),
list contains numeric vectors of best start codons by coverage.
Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.
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View source: R/ClassifierTrainingData.R
| getBestIsoformStartCodonCoverage | R Documentation |
A filter per stop codon group
Description
Uses the ribo-seq libraries for ribo-seq validation get start for each in group, count overlaps, return orf with highest per group
Usage
getBestIsoformStartCodonCoverage(tissue, cdsAndThree = FALSE, mode)
Arguments
cdsAndThree |
logical, default: FALSE, that is run of uORFs, if TRUE run for cds and trailers. |
Value
list of length 1 or 2, (2 if cdsAndThree is TRUE), list contains numeric vectors of best start codons by coverage.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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