getGeneralRiboFeatures: Get Ribo-seq features

In Roleren/uORFomePipe: uORF prediction in R

Get Ribo-seq features

Description

Excluding features that uses RNA-seq normalizations if df.rna is NULL

Usage

getGeneralRiboFeatures(
  df.rfp,
  df.rna = NULL,
  grl,
  preName = "",
  threeUTRsSpecial = NULL,
  BPPARAM = bpparam()
)

Arguments

df.rfp	ORFik experiment of Ribo-seq
df.rna	NULL
grl	the ORFs as GRangesList
preName	name to pre append in database for each feature
threeUTRsSpecial	default NULL, or a GRangesList of 3' UTRs
BPPARAM	An instance of a BiocParallelParam class, e.g., MulticoreParam, SnowParam, DoparParam.

Value

NULL (features saved to database)

Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.