getLeadersFromCage: Reassign leaders by CAGE

In Roleren/uORFomePipe: uORF prediction in R

Reassign leaders by CAGE

Description

Step 1 of uORFome pipeline: Save leaders and uORF search region (leader + cds)

Usage

getLeadersFromCage(cageFiles, filterValue = 3, BPPARAM = bpparam())

Arguments

cageFiles	a ORFik experiment with CAGE files and annotation
filterValue	The minimum number of reads on cage position, for it to be counted as possible new tss. (represented in score column in CageSeq data) If you already filtered, set it to 0.
BPPARAM	An instance of a BiocParallelParam class, e.g., MulticoreParam, SnowParam, DoparParam.

Value

invisible(NULL), files saved to disc

Roleren/uORFomePipe documentation built on Jan. 14, 2024, 5:11 a.m.