getSequenceFeatures | R Documentation |
Get sequence features from orfik
getSequenceFeatures(
organism,
biomart,
grl = uORFomePipe:::getUorfsInDb(),
mode = "uORF"
)
organism |
scientific name of organism, like Homo sapiens, Danio rerio, etc. |
biomart |
default "ensembl", get gene symbols and GO terms for uORF genes. Will be automaticly detected by organism name in ensembl database. Set to NULL if you don't want to check Gene symbols and GO terms. |
grl |
the orfs as GRangesList, default uORFomePipe:::getUorfsInDb() |
mode |
character, default: "uORF". alternative "aCDS". Do you want to predict on uORFs or artificial CDS. if "aCDS" will run twice once for whole length CDS and one for truncated CDS to validate model works for short ORFs. "CDS" is option to predict on whole CDS. |
return(invisible(NULL)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.