| adonis_OmegaSq | Calculate (partial) Omega-squared (effect-size calculation)... |
| clr | CLR transformation of community matrix, with multiplicative... |
| comdistnt.par | Inter-community mean nearest taxon distance |
| comdist.par | Inter-community mean pairwise distance |
| community_rrna | Calculate the community/sample-wise mean 16S rRNA copy... |
| gg_13_5_16S | 16S copy numbers for GreenGenes 13_5 database OTUs |
| neutral.fit | Fit Sloan et al. (2006) Neutral Model |
| neutral.rand | Fit Sloan et al. (2006) Neutral Model several times |
| proportionality | Calculate proportionality between all pairs of OTUs, for... |
| ps_euler | Make Euler diagram of shared taxa (ASVs, OTUs) across sample... |
| ps_pheatmap | Make pheatmap directly from a phyloseq object |
| ps_prune | Prune taxa from phyloseq object by their prevalence or... |
| ps_refactor | Relevel the Sample variable in a psmelted phyloseq object |
| ps_tax_clean | Clean tax_table such that NAs are replaced with names of the... |
| ps_venn | Make Venn diagram of shared taxa (ASVs, OTUs) across sample... |
| rarefy_rrna | Rarefy and normalize based on 16S rRNA copy numbers |
| rcurve | Rarefaction curve on phyloseq object Theoretical richness... |
| ses.comdist | Standardized effect size of inter-community MPD (betaMPD,... |
| ses.comdist2 | Standardized effect size of inter-community MPD (betaMPD,... |
| ses.comdistnt | Standardized effect size of inter-community MNTD (betaMNTD,... |
| ses.comdistnt2 | Standardized effect size of inter-community MNTD (betaMNTD,... |
| ses.mntd.par | Standardized effect size of MNTD |
| ses.mpd.par | Standardized effect size of MPD |
| ses.permtest | Permutation test of z-matrix |
| ses.UniFrac | Standardized effect size of unifrac |
| UniFrac.multi | Run 'UniFrac' multiple times in parallel and take the average |
| WdS.test | Permutation test of Wd* - robust distance-based multivariate... |
