Man pages for Russel88/MicEco
Various functions for microbial community data

comdistnt.parInter-community mean nearest taxon distance
comdist.parInter-community mean pairwise distance
community_rrnaCalculate the community/sample-wise mean 16S rRNA copy...
neutral.fitFit Sloan et al. (2006) Neutral Model
neutral.randFit Sloan et al. (2006) Neutral Model several times
proportionalityCalculate proportionality between all pairs of OTUs, for...
rarefy_rrnaRarefy and normalize based on 16S rRNA copy numbers
ses.bootstrapBootstrap of z-matrix
ses.comdistStandardized effect size of inter-community MPD (betaMPD,...
ses.comdist2Standardized effect size of inter-community MPD (betaMPD,...
ses.comdistntStandardized effect size of inter-community MNTD (betaMNTD,...
ses.comdistnt2Standardized effect size of inter-community MNTD (betaMNTD,...
ses.permtestPermutation test of z-matrix
ses.UniFracStandardized effect size of unifrac
UniFrac.multiRun 'UniFrac' multiple times in parallel and take the average
Russel88/MicEco documentation built on Feb. 17, 2018, 5:24 a.m.