ps_prune: Prune taxa from phyloseq object by their prevalence or...
In Russel88/MicEco: Various functions for microbial community data
ps_prune R Documentation
Prune taxa from phyloseq object by their prevalence or abundance
Description
Prune taxa from phyloseq object by their prevalence or abundance
Usage
ps_prune(data, min.samples = 0, min.reads = 0, min.abundance = 0)
Arguments
data
phyloseq object.
min.samples
Minimum number of samples the features should be present in. Default 0
min.reads
Minimum number of total reads the features should have. Default 0
min.abundance
Minimum mean relative abundance features should have. Default 0
Value
Similar to input, but with features not reaching the criteria given grouped as "Others"
Russel88/MicEco documentation built on Nov. 24, 2022, 2:33 a.m.
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| ps_prune | R Documentation |
Prune taxa from phyloseq object by their prevalence or abundance
Description
Prune taxa from phyloseq object by their prevalence or abundance
Usage
ps_prune(data, min.samples = 0, min.reads = 0, min.abundance = 0)
Arguments
data |
|
min.samples |
Minimum number of samples the features should be present in. Default 0 |
min.reads |
Minimum number of total reads the features should have. Default 0 |
min.abundance |
Minimum mean relative abundance features should have. Default 0 |
Value
Similar to input, but with features not reaching the criteria given grouped as "Others"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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