proportionality: Calculate proportionality between all pairs of OTUs, for...

Description Usage Arguments Value

View source: R/proportionality.R

Description

Calculate proportionality as proposed by Lovell et al. 2016 Proportionality: a valid alternative to correlation for relative data

Usage

1
proportionality(x, delta = 1)

Arguments

x

An otu-table with OTUs as rows OR a phyloseq object

delta

The pseudocount to exchange zeroes with. Zero-correction is multiplicative such that the proportionality between any entirely non-zero OTUs will not be affected by the pseudocount.

Value

The network association matrix with proportionality values


Russel88/MicEco documentation built on Oct. 24, 2018, 3:07 p.m.