proportionality: Calculate proportionality between all pairs of OTUs, for...
In Russel88/MicEco: Various functions for microbial community data
View source: R/proportionality.R
proportionality R Documentation
Calculate proportionality between all pairs of OTUs, for network analysis
Description
Calculate proportionality as proposed by Lovell et al. 2016 Proportionality: a valid alternative to correlation for relative data
Usage
proportionality(x, delta = 1)
Arguments
x
An otu-table with OTUs as rows OR a phyloseq object
delta
The pseudocount to exchange zeroes with. Zero-correction is multiplicative such that the proportionality between any entirely non-zero OTUs will not be affected by the pseudocount.
Value
The network association matrix with proportionality values
Russel88/MicEco documentation built on Nov. 24, 2022, 2:33 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/proportionality.R
| proportionality | R Documentation |
Calculate proportionality between all pairs of OTUs, for network analysis
Description
Calculate proportionality as proposed by Lovell et al. 2016 Proportionality: a valid alternative to correlation for relative data
Usage
proportionality(x, delta = 1)
Arguments
x |
An otu-table with OTUs as rows OR a phyloseq object |
delta |
The pseudocount to exchange zeroes with. Zero-correction is multiplicative such that the proportionality between any entirely non-zero OTUs will not be affected by the pseudocount. |
Value
The network association matrix with proportionality values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.