ses.permtest: Permutation test of z-matrix
In Russel88/MicEco: Various functions for microbial community data
ses.permtest R Documentation
Permutation test of z-matrix
Description
Permutation test of z-matrix from ses.comdist(2), ses.comdistnt and ses.UniFrac.
Test if means within or between groups is higher or lower than the overall mean of the matrix
Usage
ses.permtest(zmat, sampleGroups, R = 10000)
Arguments
zmat
Symmetric matrix with z-values
sampleGroups
Vector with the grouping of the samples in the same order as in zmat
R
Number of permutations
Value
A dataframe with p-values (pval), fdr corrected p-values (pval.adj), and average z-values (avg) for each group and combination of groups.
Russel88/MicEco documentation built on Nov. 24, 2022, 2:33 a.m.
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| ses.permtest | R Documentation |
Permutation test of z-matrix
Description
Permutation test of z-matrix from ses.comdist(2), ses.comdistnt and ses.UniFrac. Test if means within or between groups is higher or lower than the overall mean of the matrix
Usage
ses.permtest(zmat, sampleGroups, R = 10000)
Arguments
zmat |
Symmetric matrix with z-values |
sampleGroups |
Vector with the grouping of the samples in the same order as in zmat |
R |
Number of permutations |
Value
A dataframe with p-values (pval), fdr corrected p-values (pval.adj), and average z-values (avg) for each group and combination of groups.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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