ps_tax_clean: Clean tax_table such that NAs are replaced with names of the...
In Russel88/MicEco: Various functions for microbial community data
ps_tax_clean R Documentation
Clean tax_table such that NAs are replaced with names of the most specific known taxonomy prefixed with the rank.
Description
Example: An OTU is annotated as Proteobacteria in the Phylum rank, but NAs in the more specific ranks.
All annotations below Phylum for this OTU will be replaced with Phylum_Proteobacteria.
Usage
ps_tax_clean(data)
Arguments
data
phyloseq or tax_table object.
Value
Similar to input, but with NAs replaced in the tax_table
Russel88/MicEco documentation built on Nov. 24, 2022, 2:33 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| ps_tax_clean | R Documentation |
Clean tax_table such that NAs are replaced with names of the most specific known taxonomy prefixed with the rank.
Description
Example: An OTU is annotated as Proteobacteria in the Phylum rank, but NAs in the more specific ranks. All annotations below Phylum for this OTU will be replaced with Phylum_Proteobacteria.
Usage
ps_tax_clean(data)
Arguments
data |
|
Value
Similar to input, but with NAs replaced in the tax_table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.