rcurve: Rarefaction curve on phyloseq object Theoretical richness...
In Russel88/MicEco: Various functions for microbial community data
rcurve R Documentation
Rarefaction curve on phyloseq object
Theoretical richness with vegan's rarefy function
Description
Rarefaction curve on phyloseq object
Theoretical richness with vegan's rarefy function
Usage
rcurve(physeq, subsamp = 10^c(1:5), trim = TRUE, add_sample_data = TRUE)
Arguments
physeq
phyloseq object
subsamp
Vector of number of reads to subsample
trim
Remove richness estimations from subsamples larger than the library size
add_sample_data
Add sample data to data.frame
Russel88/MicEco documentation built on Nov. 24, 2022, 2:33 a.m.
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| rcurve | R Documentation |
Rarefaction curve on phyloseq object Theoretical richness with vegan's rarefy function
Description
Rarefaction curve on phyloseq object Theoretical richness with vegan's rarefy function
Usage
rcurve(physeq, subsamp = 10^c(1:5), trim = TRUE, add_sample_data = TRUE)
Arguments
physeq |
phyloseq object |
subsamp |
Vector of number of reads to subsample |
trim |
Remove richness estimations from subsamples larger than the library size |
add_sample_data |
Add sample data to data.frame |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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