comdistnt.par | R Documentation |
Parallel calculation of MNTD (mean nearest taxon distance) separating taxa in two communities, a measure of phylogenetic beta diversity
comdistnt.par( comm, dis, abundance.weighted = FALSE, exclude.conspecifics = FALSE, cores = 1, progress = TRUE )
comm |
Community data matrix with samples as rows |
dis |
Distance matrix (generally a phylogenetic distance matrix) |
abundance.weighted |
Should mean nearest taxon distances for each species be weighted by species abundance? (default = FALSE) |
exclude.conspecifics |
Should conspecific taxa in different communities be exclude from MNTD calculations? (default = FALSE) |
cores |
How many cores should be used for parallel computing' |
progress |
Show a progress bar |
A distance matrix of MNTD values
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