API for SWittouck/tidyamplicons
Functions to Manipulate and Visualize Amplicon Abundance Data
| Global functions | |
|---|---|
| %>% | Man page |
| .data | Man page |
| := | Man page |
| abundances | Man page |
| abundances_matrix | Man page |
| add_alphas | Man page Source code |
| add_cluster | Man page Source code |
| add_codifab | Man page |
| add_copca | Man page |
| add_diversity_measures | Man page Source code |
| add_jervis_bardy | Man page Source code |
| add_lib_size | Man page Source code |
| add_logratios | Man page Source code |
| add_max_rel_abundance | Man page Source code |
| add_mean_rel_abundances | Man page Source code |
| add_occurrences | Man page Source code |
| add_pcoa | Man page Source code |
| add_presence_counts | Man page Source code |
| add_rel_abundance | Man page Source code |
| add_rel_occurrence | Man page Source code |
| add_sample_clustered | Man page Source code |
| add_sample_tibble | Man page Source code |
| add_spike_ratio | Man page Source code |
| add_taxon_name | Man page Source code |
| add_taxon_name_color | Man page Source code |
| add_taxon_tibble | Man page Source code |
| add_total_rel_abundance | Man page Source code |
| aggregate_samples | Man page Source code |
| aggregate_taxa | Man page Source code |
| any_samples_left | Source code |
| any_taxa_left | Source code |
| as_abundances | Man page |
| as_abundances_matrix | Man page |
| as_label | Man page |
| as_name | Man page |
| as_phyloseq | Man page |
| as_tidyamplicons | Man page |
| bar_plot | Man page Source code |
| bar_plot_ly | Man page Source code |
| betas | Man page Source code |
| change_id_samples | Man page Source code |
| change_id_taxa | Man page Source code |
| classify_taxa | Man page Source code |
| codifab_plot | Man page |
| create_test_ta | Man page Source code |
| create_tidyamplicons | Man page Source code |
| enquo | Man page |
| enquos | Man page |
| everything | Man page |
| filter_abundances | Man page Source code |
| filter_samples | Man page Source code |
| filter_taxa | Man page Source code |
| get_abundances_extended | Man page |
| get_bar_plot | Man page |
| get_betas | Man page |
| get_history_plot | Man page |
| get_numbers | Man page |
| get_rel_abundance_matrix | Man page Source code |
| history_plot | Man page Source code |
| make_tidyamplicons | Man page |
| mean_rel_abundances | Man page |
| merge_redundant_taxa | Source code |
| merge_samples | Man page |
| merge_taxa | Man page |
| merge_tidyamplicons | Man page |
| mutate_abundances | Man page Source code |
| mutate_samples | Man page Source code |
| mutate_taxa | Man page Source code |
| numbers | Man page Source code |
| occurrences | Man page |
| pcoa_plot_ly | Man page Source code |
| perform_adonis | Man page |
| prepare_for_bp | Source code |
| process_abundance_selection | Man page Source code |
| process_sample_selection | Man page Source code |
| process_taxon_selection | Man page Source code |
| rank_names | Man page Source code |
| rarefy | Man page Source code |
| read_tidyamplicons | Man page |
| remove_empty_samples | Man page Source code |
| report_numbers | Man page Source code |
| reset_ids | Man page |
| retain_abundances | Source code |
| retain_sample_id | Source code |
| retain_taxon_id | Source code |
| sample_plot | Man page Source code |
| samples | Man page |
| select_abundances | Man page Source code |
| select_samples | Man page Source code |
| select_taxa | Man page Source code |
| set_rank_names | Man page Source code |
| taxa | Man page |
| taxon_counts_in_conditions | Man page |
| tidy_phyloseq | Man page |
| tidyamplicons | Man page |
| tidyeval | Man page |
| trim_asvs | Man page Source code |
| update_id_names | Man page |
| update_lib_sizes | Man page Source code |
| update_tidyamplicons | Man page |
| write_tidyamplicons | Man page |
