API for Sea2Data/Rstox
Running Stox functionality independently in R
| Global functions | |
|---|---|
| JavaString2vector | Man page |
| NMDdecode | Man page |
| Rstox | Man page |
| Rstox-package | Man page |
| Rstox.init | Man page |
| abbrMatch | Man page |
| abbrevWords | Man page |
| addAttributes | Man page |
| addProcesses | Man page |
| addStratum | Man page |
| addStratumBordersAndNames | Man page |
| aggPSUNASC | Man page |
| aggregateBySpeciesCategory | Man page |
| appendToListKeepAttr | Man page |
| applyParlist | Man page |
| as.dataFrame_full | Man page |
| as.matrix_full | Man page |
| baseline2eca | Man page |
| bootstrapOneIteration | Man page |
| bootstrapParallel | Man page |
| checkAgeLength | Man page |
| checkCovariateConsistency | Man page |
| checkLandings | Man page |
| checkNumPSUsInStratum | Man page |
| checkWeightLength | Man page |
| check_columns_present | Man page |
| check_covariates | Man page |
| check_landings_cov | Man page |
| check_none_missing | Man page |
| closeAllProjects | Man page |
| closeProject | Man page |
| createProject | Man page |
| data.frame2nestedList | Man page |
| data.frame2parString | Man page |
| data.frame2xml | Man page |
| diagnosticsCoverageRECA | Man page |
| diagnosticsRECA | Man page |
| diagnosticsSamplesRECA | Man page |
| diagnostics_model_configuration | Man page |
| distributeAbundance | Man page |
| downloadProjectZip | Man page |
| downloadXML | Man page |
| expandSeed | Man page |
| extraxtAndSetDotDotAttributes | Man page |
| factorNAfirst | Man page |
| formatPlot | Man page |
| generateRScripts | Man page |
| generateSpeciesMatrix | Man page |
| geo2xy | Man page |
| getAvailableFunctions | Man page |
| getAvailableProjects | Man page |
| getBaseline | Man page |
| getBaselineParameters | Man page |
| getBioticAssignments | Man page |
| getCentroid | Man page |
| getCovariateValue | Man page |
| getCovparam | Man page |
| getDataFrame | Man page |
| getDataFrame1 | Man page |
| getDataFrameAtLevel | Man page |
| getDataMatrixANDCovariateMatrix | Man page |
| getFunsRstox | Man page |
| getGlobalParameters | Man page |
| getHIXSDfile | Man page |
| getHardCoded | Man page |
| getInfo | Man page |
| getJavaMemory | Man page |
| getLandings | Man page |
| getLengthGivenAge_Biotic | Man page |
| getLogStoXid | Man page |
| getMatrixList | Man page |
| getMidSeason | Man page |
| getMode | Man page |
| getModelType | Man page |
| getMultipolygon | Man page |
| getNASCDistr | Man page |
| getNMDdata | Man page |
| getNMDinfo | Man page |
| getNMDver | Man page |
| getPSUNASC | Man page |
| getParlist | Man page |
| getPlots | Man page |
| getPlottingUnit | Man page |
| getPrecisionLevel | Man page |
| getProcess | Man page |
| getProcessDataTableAsDataFrame | Man page |
| getProjString | Man page |
| getProject | Man page |
| getProjectData | Man page |
| getProjectDataEnv | Man page |
| getProjectPaths | Man page |
| getReports | Man page |
| getResampledNASCDistr | Man page |
| getRstoxDef | Man page |
| getRstoxEnv | Man page |
| getRstoxVersion | Man page |
| getSeedM | Man page |
| getSeedV | Man page |
| getSequenceToSampleFrom | Man page |
| getSpatial | Man page |
| getTransectFileName | Man page |
| getTransectID | Man page |
| getVar | Man page |
| getVarSetAttr | Man page |
| getWeightGivenLength_Biotic | Man page |
| get_eq_tail_ci | Man page |
| get_fixed_effects_landings | Man page |
| get_g_s_a_frame | Man page |
| get_gta_landings | Man page |
| getow | Man page |
| hasAgeInSample | Man page |
| imputeByAge | Man page |
| initiateRstoxEnv | Man page |
| insertBioticassignment | Man page |
| insertEdsupsu | Man page |
| insertPsustratum | Man page |
| insertStratumpolygon | Man page |
| insertSuassignment | Man page |
| insertToProjectXML | Man page |
| is.empty | Man page |
| isMatrixList | Man page |
| isMultipolygon | Man page |
| isProject | Man page |
| isSpatial | Man page |
| isURL | Man page |
| jBoolean | Man page |
| jDouble | Man page |
| jInt | Man page |
| linkPSU2Stratum | Man page |
| list2XML | Man page |
| listOpenProjects | Man page |
| loadEnv | Man page |
| loadProjectData | Man page |
| matrix2multipolygon | Man page |
| matrixList2multipolygon | Man page |
| matrixListLevel | Man page |
| mergeSpeciesMatrix | Man page |
| modifyBaselineParameters | Man page |
| modifyProject | Man page |
| moveToTrash | Man page |
| multipolygon2matrix | Man page |
| multipolygon2spatial | Man page |
| openProject | Man page |
| papply | Man page |
| parString2data.frame | Man page |
| plotAbundance | Man page |
| plotAbundance_AcousticTrawl | Man page |
| plotAbundance_SweptAreaTotal | Man page |
| plotNASCDistribution | Man page |
| plotRECA | Man page |
| plotRECAresults | Man page |
| plotSampleCompositionRECA | Man page |
| plotSamplingOverview | Man page |
| plotStratum | Man page |
| plot_RECA_results_panel | Man page |
| plot_catch_at_age_ci | Man page |
| plot_catch_fractions | Man page |
| plot_cell_coverage | Man page |
| plot_cell_landings | Man page |
| plot_ci | Man page |
| plot_fixed_effect_coverage | Man page |
| plot_gear_temporal_area | Man page |
| plot_length_at_age | Man page |
| plot_mission_types | Man page |
| plot_pred_box | Man page |
| plot_sample_types | Man page |
| plot_station_types | Man page |
| plot_weight_at_age | Man page |
| pointToStoXFiles | Man page |
| polyArea | Man page |
| polyArea_test | Man page |
| prepareDATRAS | Man page |
| prepareRECA | Man page |
| projectMatrixList | Man page |
| rapplyKeepDataFrames | Man page |
| readBaselineFiles | Man page |
| readBaselineParametersJava | Man page |
| readHIXSD | Man page |
| readStrataPolygons | Man page |
| readWKTSplit | Man page |
| readXMLfiles | Man page |
| reopenProject | Man page |
| reportAbundance | Man page |
| reportAbundanceAtLevel | Man page |
| reportAbundance_AcousticTrawl | Man page |
| reportAbundance_SweptAreaLength | Man page |
| reportAbundance_SweptAreaTotal | Man page |
| reportRECA | Man page |
| resetProject | Man page |
| rm.na | Man page |
| runBaseline | Man page |
| runBootstrap | Man page |
| runBootstrap_1.6 | Man page |
| runBootstrap_AcousticTrawl | Man page |
| runBootstrap_SweptAreaLength | Man page |
| runBootstrap_SweptAreaTotal | Man page |
| runFunsRstox | Man page |
| runRECA | Man page |
| runRScripts | Man page |
| sampleSorted | Man page |
| saveCatchMatrix | Man page |
| saveProject | Man page |
| saveProjectData | Man page |
| saveRImage | Man page |
| saveasProject | Man page |
| searchNMDCruise | Man page |
| setAssignments | Man page |
| setAttributes | Man page |
| setBaselineParameters | Man page |
| setJavaMemory | Man page |
| setNASC | Man page |
| setPrecisionLevel | Man page |
| setProjectData | Man page |
| setSeedSingle | Man page |
| spatial2matrixList | Man page |
| splitBioticCC | Man page |
| splitPredCC | Man page |
| subsetStrata | Man page |
| surveyPlanner | Man page |
| updateProject | Man page |
| validateHIXSD | Man page |
| varianceEstimation | Man page |
| writeAcousticXML | Man page |
| writeBioticXML | Man page |
| writeRecaConfiguration | Man page |
| writeTransects | Man page |
| writeTransectsGPX | Man page |
| writeTransectsINFO | Man page |
| writeTransectsMaxSea | Man page |
| writeTransectsTRACK | Man page |
| writeXMLusingXSD | Man page |
| wtd.strata.est | Man page |
