Man pages for ShadowFiendSF/GSminer
Select gold standard including positive and negative genes pairs based on the Gene Ontology
| buildMapping-methods | Method buildMapping. |
| CC2gene-methods | Method CC2gene |
| filterNeg-GSminer-method | Filter neagtive paris by cytoplasm and nucleus cell... |
| filterNeg-methods | filterNeg method generics |
| gene2BP-methods | Method gene2BP. |
| GeneGOMapping-class | Class "GeneGOMapping" A S4 class for mapping between gene and... |
| geneSim | The similarity between genes(modified the dDAGgeneSim in... |
| getGOSim | getGOSim |
| getThreshold-methods | getThreshold method generics |
| GO2igraph | convert to graph format |
| GOCluster | GOCluster |
| GSminer-class | Class "GSminer" |
| GSminerPackage | GSminer-package |
| loadBPoffsprings-methods | loadBPoffsprings method generics |
| loadCCoffsprings-methods | loadCCoffsprings method |
| MappingFileValid | Validation of GeneGOMapping object |
| outputPosNeg-methods | outputPosNeg method generics |
| removeDup | Remove duolicated rows |
| selectGO-methods | selectGO method generics |
| TAIR.GO | Datasets the mapping between Arabidopsis thaliana gene and GO... |
