filterNeg-GSminer-method: Filter neagtive paris by cytoplasm and nucleus cell...

In ShadowFiendSF/GSminer: Select gold standard including positive and negative genes pairs based on the Gene Ontology

Description

Filter neagtive paris by cytoplasm and nucleus cell compartments

Usage

## S4 method for signature 'GSminer'
filterNeg(object, negFilename = "negativeGene.txt",
  FNegFile = "negativeGene.filtered.txt", sep = "\t")

Arguments

object	the GSminer object
negFilename	the negative gene file name used for filtering
FNegFile	the output file name which is filtered by cytoplasm and nucleus cell compartments
sep	the delimiter of the file

Value

neagtive paris file

Examples

## Not run: 
inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
library(GSminer)
test <- GSminer(inputFile = inputFile)
filterNeg(object, negFilename = "negFilename", FNegFile = "FNegFile")
\
## End(Not run)

ShadowFiendSF/GSminer documentation built on May 29, 2019, 3:03 p.m.