getThreshold-methods: getThreshold method generics
In ShadowFiendSF/GSminer: Select gold standard including positive and negative genes pairs based on the Gene Ontology
Description
Usage
Arguments
Value
Author(s)
Examples
Description
getThreshold method generics
select the GO term size
Usage
1
2
## S4 method for signature 'GSminer'
getThreshold(object, u = 0.5, l = 0.25)
Arguments
object
the GSminer object
u
the upper bound, 1/2 by default
l
the lower bound, 1/4 by default
Value
a list of upper bound and lower bound
Author(s)
Li Zhaohong && Wu Zefeng
Examples
1
2
3
4
inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
miner <- GSminer(inputFile = inputFile, sep = "\t")
# just for an example:
#getThreshold(miner, u = 0.5, l = 0.25)
ShadowFiendSF/GSminer documentation built on May 29, 2019, 3:03 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
getThreshold method generics
select the GO term size
Usage
1 2 | ## S4 method for signature 'GSminer'
getThreshold(object, u = 0.5, l = 0.25)
|
Arguments
object |
the GSminer object |
u |
the upper bound, 1/2 by default |
l |
the lower bound, 1/4 by default |
Value
a list of upper bound and lower bound
Author(s)
Li Zhaohong && Wu Zefeng
Examples
1 2 3 4 | inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
miner <- GSminer(inputFile = inputFile, sep = "\t")
# just for an example:
#getThreshold(miner, u = 0.5, l = 0.25)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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