gene2BP-methods: Method gene2BP.
In ShadowFiendSF/GSminer: Select gold standard including positive and negative genes pairs based on the Gene Ontology
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Method gene2BP.
gene for GO Biological Process (BP) terms
Usage
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## S4 method for signature 'GeneGOMapping'
gene2BP(object)
Arguments
object
the GeneGOMapping object
Value
a list of GO to Gene mapping
Author(s)
Li Zhaohong && Wu Zefeng
Examples
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inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
#inputFile the name of input file which contain the mapping
#relationship between the gene and GO terms
#sep used in the input file by default is tab
#for an example how to use:
miner <- GSminer(inputFile = inputFile, sep = "\t")
#gene2BP(miner@ggmapping)
ShadowFiendSF/GSminer documentation built on May 29, 2019, 3:03 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Method gene2BP.
gene for GO Biological Process (BP) terms
Usage
1 2 | ## S4 method for signature 'GeneGOMapping'
gene2BP(object)
|
Arguments
object |
the GeneGOMapping object |
Value
a list of GO to Gene mapping
Author(s)
Li Zhaohong && Wu Zefeng
Examples
1 2 3 4 5 6 7 | inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
#inputFile the name of input file which contain the mapping
#relationship between the gene and GO terms
#sep used in the input file by default is tab
#for an example how to use:
miner <- GSminer(inputFile = inputFile, sep = "\t")
#gene2BP(miner@ggmapping)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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