GSminer-class: Class "GSminer"
In ShadowFiendSF/GSminer: Select gold standard including positive and negative genes pairs based on the Gene Ontology
Description
Arguments
Slots
Author(s)
See Also
Examples
Description
GSminer has three slots:
1. ggmapping object for gene to GO terms mapping
2. BPoffsprings a list for BP GO terms to gene mapping
3. CCoffsprings a list for CC GO terms to gene mapping
Note: the BPoffspring and CCoffspring mimic the behavior of pass by const reference in C++
Arguments
inputFile
input file name(with absolute path)
sep
input file separator by default is tab
Slots
ggmappingwhich is the instance of GeneGOMapping for gene to GO terms mapping
mappingis a private env
Author(s)
Li Zhaohong && Wu Zefeng
See Also
Examples
1
2
3
4
5
inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
miner <- GSminer(inputFile = inputFile, sep = "\t")
ggmap <- methods::new("GeneGOMapping", inputFile = inputFile, sep = "\t")
miner@ggmapping <- ggmap
loadBPoffsprings(miner)
ShadowFiendSF/GSminer documentation built on May 29, 2019, 3:03 p.m.
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Description Arguments Slots Author(s) See Also Examples
Description
GSminer has three slots: 1. ggmapping object for gene to GO terms mapping 2. BPoffsprings a list for BP GO terms to gene mapping 3. CCoffsprings a list for CC GO terms to gene mapping Note: the BPoffspring and CCoffspring mimic the behavior of pass by const reference in C++
Arguments
inputFile |
input file name(with absolute path) |
sep |
input file separator by default is tab |
Slots
ggmappingwhich is the instance of GeneGOMapping for gene to GO terms mapping
mappingis a private env
Author(s)
Li Zhaohong && Wu Zefeng
See Also
Examples
1 2 3 4 5 | inputFile <- paste0(system.file(package = "GSminer"), "/extdata/TAIR.GO")
miner <- GSminer(inputFile = inputFile, sep = "\t")
ggmap <- methods::new("GeneGOMapping", inputFile = inputFile, sep = "\t")
miner@ggmapping <- ggmap
loadBPoffsprings(miner)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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