R/HiC.R

In Solatar/seeqR:

# library(GOTHiC)
#
# path0="D:/Science/Heidel/Documents/Projects/projectPLCG1/Hi-C_bonifer/"
# fileName="SRR7521620_1_2.hicup_modified.txt"# restrictionFile=""
#
# setwd(path0)
# seekHiC <- function(file, sampleName="unknownSample", restrictionFile, resolution=500, cistrans="cis", parallel=F, cores=NULL){
#   gothic <- GOTHiC::GOTHiChicup(file, sampleName=sampleName, res=resolution, restrictionFile=restrictionFile, cistrans=cistrans, parallel=parallel, cores=cores)
#   gothic
# }
#
# mygoth <- seekHiC(fileName, "SRR751620_chr20")