API for SteRoe/PatternMatchR
A Tool for Visualization of Different Traits in Heatmaps
| Global functions | |
|---|---|
| .onAttach | Man page Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| CalculateModels | Man page Source code |
| ClusteringProbesGeneral_SERVER | Source code |
| ClusteringProbesGeneral_UI | Source code |
| ClusteringProbes_SERVER | Source code |
| ClusteringProbes_UI | Source code |
| ClusteringTraits_SERVER | Source code |
| ClusteringTraits_UI | Source code |
| Clustering_SERVER | Source code |
| Clustering_UI | Source code |
| GlobalSelection_SERVER | Man page Source code |
| GlobalSelection_UI | Source code |
| HeatMapDistances | Source code |
| HeatMap_SERVER | Source code |
| HeatMap_UI | Source code |
| PCPlot_SERVER | Source code |
| PCPlot_UI | Source code |
| PatternMatchRApp | Man page Source code |
| ReduceData_SERVER | Source code |
| ReduceData_UI | Source code |
| Search_Full_SERVER | Source code |
| Search_Full_UI | Source code |
| VolcanoPlot_SERVER | Source code |
| VolcanoPlot_UI | Source code |
| addInstToPath | Source code |
| addLinkToEWASDataHub | Source code |
| addLinkToEWASDataHubShort | Source code |
| addLinkToMRCEWASCatalog | Source code |
| addLinkToMRCEWASCatalogShort | Source code |
| brush_action_condHM_P_Val | Man page Source code |
| brush_action_condHeatmap_LogFC | Source code |
| brush_action_fullHM | Man page Source code |
| brush_action_fullHM_LogFC | Man page Source code |
| calculateDistanceNeigboursProbes | Man page Source code |
| calculateEpigeneticEffectsAdjusted | Man page Source code |
| checkResultP_Val_cg | Man page Source code |
| checklistResultP_Val_DeltaMeth_NValidity | Man page Source code |
| click_action_condHM_P_Val | Source code |
| click_action_condHeatmap_LogFC | Source code |
| click_action_fullHM | Man page Source code |
| click_action_fullHM_LogFC | Man page Source code |
| combinedDFInteractiveHeatMap | Man page Source code |
| combinedDFInteractiveHeatMapLogFC | Man page Source code |
| delete.na | Man page Source code |
| emptyHM | Man page Source code |
| empty_plot | Source code |
| extractMantissaExponent | Man page Source code |
| findInFiles | Man page Source code |
| generate_ui | Source code |
| getAnnotatedProbeTable | Source code |
| getAvailNForDMBorderParallel | Source code |
| getAvailNForNBorderParallel | Source code |
| getAvailNForP_VALBorderParallel | Man page Source code |
| getBinaryFactorialVars | Man page Source code |
| getClustResFast | Man page Source code |
| getClusterMedoids | Man page Source code |
| getClustergramLong | Man page Source code |
| getClustersTable | Man page Source code |
| getDend | Man page Source code |
| getDimensionsForPlotlySPLOM | Man page Source code |
| getDistMat | Man page Source code |
| getEmptyPlot | Man page Source code |
| getMedoidsTable | Man page Source code |
| getNForDMBorder | Man page Source code |
| getNForNBorder | Man page Source code |
| getNForP_ValBorder | Man page Source code |
| getNumCores | Source code |
| getPHENODF | Man page Source code |
| getPReducedTraitData | Man page Source code |
| getPlot | Source code |
| getProbeReducedDataStructure | Man page Source code |
| getProbeReducedDataStructureWOGap | Man page Source code |
| getReducedP_Valdf | Man page Source code |
| getResultDfP_D_N | Man page Source code |
| getSPLOM | Man page Source code |
| getSearchResultCpGHMPositions | Source code |
| getSearchResultTraitHMPositions | Source code |
| getTraitReducedDataStructure | Man page Source code |
| getYoungestFile | Man page Source code |
| getlistOfResultsDF | Man page Source code |
| hover_action_condHM_P_Val | Source code |
| hover_action_condHeatmap_LogFC | Source code |
| hover_action_fullHM | Man page Source code |
| hover_action_fullHM_LogFC | Man page Source code |
| is.valid | Man page Source code |
| lambda_fun | Source code |
| loadBaseData | Source code |
| loadDNAm | Man page Source code |
| loadDir | Man page Source code |
| loadDirLists | Source code |
| loadFolderDFList | Man page Source code |
| loadObjects | Man page Source code |
| loadObjectsForCalculation | Man page Source code |
| loadResultDF | Man page Source code |
| loadResultFile | Man page Source code |
| loadtraitDFs | Man page Source code |
| mclapply_preserve_names | Source code |
| mergeDFP_Val_Labels | Man page Source code |
| originalWd | Man page |
| plotCombinedHM | Source code |
| removeAdjFromColname | Man page Source code |
| removeMultiModelCpGFromBeta | Source code |
| removeOutliers | Source code |
| removeTraitsMinN | Man page Source code |
| robregCTAdjustedWithMerge2 | Source code |
| server | Source code |
| sysTimePID | Source code |
| updateReduceDataSliders | Source code |
| updateTxtLoadOut | Man page Source code |
| updateTxtMergeOut | Man page Source code |
| updateTxtOmitProbesOut | Source code |
| updateTxtOmitTraitsOut | Source code |
| updateTxtpReduceOut | Man page Source code |
