Man pages for Subhayan18/CRUST
Multi-regional clonal deconvolution of tumor sequencing data
| AlleleComp | Copynumber estimation |
| cluster.doc | Clonal deconvolution |
| cluster.doubt | User overriden clonal deconvolution |
| CopySeg_falcon | Copynumber estimation |
| CopySeg_sequenza | Copynumber estimation |
| match.maker | Summary estimate compiler |
| metastasis_1 | Human neuroblastoma tumor sample |
| metastasis_2 | Human neuroblastoma tumor sample |
| mutect2.qc | Quality Control on Mutect2 output |
| Neuroblastoma | Human neuroblastoma data |
| primary_1 | Human neuroblastoma tumor sample |
| primary_2 | Human neuroblastoma tumor sample |
| segment.plot | Plot of allelic composition |
| seqn.scale | Probabilistic quotient normalization of DNA sequencing data |
| test.dat | Random number generated WES data for eight hypothetical... |
| T.goodness.test | Test of fit of clonal deconvolution |
| variant.auto.plot | Automated Multi-sample plot |
| variant.plot | Multi-sample variant plot |
| View_summary | Copynumber plots |
