variant.plot: Multi-sample variant plot
In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data
Description
Usage
Arguments
Value
Examples
Description
Plotting a specific variant present in more than one WES sample
Usage
1
variant.plot(CD.obj, annotation.col, variant)
Arguments
CD.obj
A cluster.doc object
annotation.col
name of the column containing annotations of the variants
in original WES dataframe used in the clonal deconvolution using cluster.doc
variant
a character string specifying only one annotation which is to be displayed
Value
A plot object with the relevant annotation highlighted
Examples
1
2
#cd.res<-cluster.doc(test.dat,1,2)
#variant.plot(cd.res,'annotation','variant_74')
Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.
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Description Usage Arguments Value Examples
Description
Plotting a specific variant present in more than one WES sample
Usage
1 | variant.plot(CD.obj, annotation.col, variant)
|
Arguments
CD.obj |
A |
annotation.col |
name of the column containing annotations of the variants
in original WES |
variant |
a |
Value
A plot object with the relevant annotation highlighted
Examples
1 2 | #cd.res<-cluster.doc(test.dat,1,2)
#variant.plot(cd.res,'annotation','variant_74')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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