View_summary: Copynumber plots

In Subhayan18/CRUST: Multi-regional clonal deconvolution of tumor sequencing data

Description

Summaries of copynumber estimations and allelic segmentations described in four plots

Usage

View_summary(data, filename = NULL)

Arguments

data	An AlleleComp object of the sequencing calls.
filename	a character denominating sample name.

Value

A pdf file with plots on twenty two autosomes. The left panel of each plot shows allelic imbalance against average segmental log ratios. In the right panel from top to bottom three plots describes chromosomal relative coverage, allele frequency and estimated copynumber.

Examples

#met1<-AlleleComp(data = metastasis_1, AD = "AD", method = "naive", file = "TEMP");
#View_summary(data = met1, filename = "NB_met1")

Subhayan18/CRUST documentation built on Dec. 18, 2021, 3:03 p.m.